I had the stutter, here is how I fixed it. In your video card settings (not LFS settings) set Vsync to "Controlled by Application".
Now go into LFS Options > Misc
Set Full screen vertical sync: to [yes]
and Limit in-game frame rate: to [no]
Also, switch to windowed mode (shift+F4) and then back to full screen if you're using Vsync, it nearly doubled my FPS for some reason.